Cationic phosphoramidate -oligonucleotides efficiently target single-stranded DNA and RNA and inhibit hepatitis C virus IRES-mediated translation - Université de Montpellier
Article Dans Une Revue Nucleic Acids Research Année : 2003

Cationic phosphoramidate -oligonucleotides efficiently target single-stranded DNA and RNA and inhibit hepatitis C virus IRES-mediated translation

Résumé

A potential means to improve the ef®cacy of steric-blocking antisense oligonucleotides (ON) is to increase their af®nity for a target RNA. The grafting of cationic amino groups to the backbone of the ON is one way to achieve this, as it reduces the electro-static repulsion between the ON and its target. We have examined the duplex stabilising effects of introducing cationic phosphoramidate internucle-oside linkages into ON with a non-natural a-anomeric con®guration. Cationic a-ON bound with high af®nity to single-stranded DNA and RNA targets. Duplex stabilisation was proportional to the number of cationic modi®cations, with fully cationic ON having particularly high thermal stability. The average stabilisation was greatly increased at low ionic strength. The duplex formed between cationic a-ON and their RNA targets were not substrates for RNase H. The penalty in T m in¯icted by a single mis-match, however, was high; suggesting that they are well suited as sequence-speci®c, steric-blocking, antisense agents. Using a well-described target sequence in the internal ribosome entry site of the human hepatitis C virus, we have con®rmed this potential in a cell-free translation assay as well as in a whole cell assay. Interestingly, no vectorisation was necessary for the cationic a-ON in cell culture.
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Dates et versions

hal-01878566 , version 1 (21-09-2018)

Identifiants

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Thibaut Michel, Camille Martinand-Mari, Francoise Debart, Bernard Lebleu, Ian Robbins, et al.. Cationic phosphoramidate -oligonucleotides efficiently target single-stranded DNA and RNA and inhibit hepatitis C virus IRES-mediated translation. Nucleic Acids Research, 2003, 31 (18), pp.5282 - 5290. ⟨10.1093/nar/gkg733⟩. ⟨hal-01878566⟩
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