Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Sina Adl
(1)
,
David Bass
(2)
,
Christopher Lane
(3)
,
Julius Lukeš
(4)
,
Conrad Schoch
(5)
,
Alexey Smirnov
(6)
,
Sabine Agatha
(7)
,
Cédric Berney
(8)
,
Matthew Brown
(9)
,
Fabien Burki
(10)
,
Paco Cárdenas
(11)
,
Ivan Čepička
(12)
,
Ludmila Chistyakova
(6)
,
Javier del Campo
(13)
,
Micah Dunthorn
(14)
,
Bente Edvardsen
(15)
,
Yana Eglit
(16)
,
Laure Guillou
,
Vladimír Hampl
(16)
,
Aaron Heiss
(17)
,
Mona Hoppenrath
(18)
,
Timothy James
(19)
,
Sergey Karpov
(6)
,
Eunsoo Kim
(20)
,
Martin Kolisko
(21)
,
Alexander Kudryavtsev
(6)
,
Daniel Lahr
(22)
,
Enrique Lara
(23)
,
Line Le Gall
(24)
,
Denis Lynn
(25)
,
David Mann
(26)
,
Ramon Massana I Molera
(27)
,
Edward Mitchell
(23)
,
Christine Morrow
(28)
,
Jong Soo Park
(29)
,
Jan Pawlowski
(30)
,
Martha Powell
(31)
,
Daniel Richter
(27)
,
Sonja Rueckert
(32)
,
Lora Shadwick
(33)
,
Satoshi Shimano
(34)
,
Frederick Spiegel
(33)
,
Guifré Torruella I Cortes
(35)
,
Noha Youssef
(36)
,
Vasily Zlatogursky
(6)
,
Qianqian Zhang
(37)
1
U of S -
University of Saskatchewan [Saskatoon, Canada]
2 NHM - The Natural History Museum [London]
3 URI - University of Rhode Island
4 BIOLOGY CENTRE CAS - Institute of Parasitology [České Budějovice]
5 NIH - National Institutes of Health [Bethesda, MD, USA]
6 SPBU - Saint Petersburg State University
7 Universität Salzburg
8 EPEP - Evolution des Protistes et Ecosystèmes Pélagiques
9 Mississippi State University [Mississippi]
10 Uppsala University
11 BOREA - Biologie des Organismes et Ecosystèmes Aquatiques
12 UK - Univerzita Karlova [Praha, Česká republika] = Charles University [Prague, Czech Republic]
13 UBC - University of British Columbia
14 University of Kaiserslautern [Kaiserslautern]
15 UiO - University of Oslo
16 Dalhousie University [Halifax]
17 AMNH - American Museum of Natural History [New York, USA] = Musée américain d'histoire naturelle [New York, USA]
18 DZMB - German Centre for Marine Biodiversity Research [Wilhelmshaven, Allemagne]
19 University of Michigan [Ann Arbor]
20 Division of Invertebrate Zoology, American Museum of Natural History [New York, USA]
21 CAS - Czech Academy of Sciences [Prague]
22 USP - Universidade de São Paulo = University of São Paulo
23 UNINE - Université de Neuchâtel = University of Neuchatel
24 ISYEB - Institut de Systématique, Evolution, Biodiversité
25 University of Guelph
26 Royal Botanic Garden [Edinburgh]
27 CSIC - Centro de Investigaciones Biológicas
28 NMNI - National Museums Northern Ireland
29 KNU - Kyungpook National University [Daegu]
30 UNIGE - Université de Genève = University of Geneva
31 UA - University of Alabama [Tuscaloosa]
32 Edinburgh Napier University
33 University of Arkansas [Fayetteville]
34 Hosei University
35 UP11 - Université Paris-Sud - Paris 11
36 OSU - Oklahoma State University [Stillwater]
37 CAS - Chinese Academy of Sciences [Beijing]
2 NHM - The Natural History Museum [London]
3 URI - University of Rhode Island
4 BIOLOGY CENTRE CAS - Institute of Parasitology [České Budějovice]
5 NIH - National Institutes of Health [Bethesda, MD, USA]
6 SPBU - Saint Petersburg State University
7 Universität Salzburg
8 EPEP - Evolution des Protistes et Ecosystèmes Pélagiques
9 Mississippi State University [Mississippi]
10 Uppsala University
11 BOREA - Biologie des Organismes et Ecosystèmes Aquatiques
12 UK - Univerzita Karlova [Praha, Česká republika] = Charles University [Prague, Czech Republic]
13 UBC - University of British Columbia
14 University of Kaiserslautern [Kaiserslautern]
15 UiO - University of Oslo
16 Dalhousie University [Halifax]
17 AMNH - American Museum of Natural History [New York, USA] = Musée américain d'histoire naturelle [New York, USA]
18 DZMB - German Centre for Marine Biodiversity Research [Wilhelmshaven, Allemagne]
19 University of Michigan [Ann Arbor]
20 Division of Invertebrate Zoology, American Museum of Natural History [New York, USA]
21 CAS - Czech Academy of Sciences [Prague]
22 USP - Universidade de São Paulo = University of São Paulo
23 UNINE - Université de Neuchâtel = University of Neuchatel
24 ISYEB - Institut de Systématique, Evolution, Biodiversité
25 University of Guelph
26 Royal Botanic Garden [Edinburgh]
27 CSIC - Centro de Investigaciones Biológicas
28 NMNI - National Museums Northern Ireland
29 KNU - Kyungpook National University [Daegu]
30 UNIGE - Université de Genève = University of Geneva
31 UA - University of Alabama [Tuscaloosa]
32 Edinburgh Napier University
33 University of Arkansas [Fayetteville]
34 Hosei University
35 UP11 - Université Paris-Sud - Paris 11
36 OSU - Oklahoma State University [Stillwater]
37 CAS - Chinese Academy of Sciences [Beijing]
Cédric Berney
- Fonction : Auteur
- PersonId : 772942
- ORCID : 0000-0001-8689-9907
Matthew Brown
- Fonction : Auteur
- PersonId : 795511
- ORCID : 0000-0002-1254-0608
Laure Guillou
- Fonction : Auteur
- PersonId : 5584
- IdHAL : laure-guillou
- ORCID : 0000-0003-1032-7958
- IdRef : 136876897
Martin Kolisko
- Fonction : Auteur
- PersonId : 791675
- ORCID : 0000-0003-0600-1867
Enrique Lara
- Fonction : Auteur
- PersonId : 775920
- ORCID : 0000-0001-8500-522X
Line Le Gall
- Fonction : Auteur
- PersonId : 176147
- IdHAL : line-le-gall
- ORCID : 0000-0001-7807-4569
- IdRef : 070112010
Jan Pawlowski
- Fonction : Auteur
- PersonId : 764498
- ORCID : 0000-0003-2421-388X
Daniel Richter
- Fonction : Auteur
- PersonId : 749412
- IdHAL : daniel-richter
Résumé
This revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.
Origine : Fichiers éditeurs autorisés sur une archive ouverte