A. Abudurexiti, S. Adkins, D. Alioto, S. V. Alkhovsky, T. Av?i?-?upanc et al., Taxonomy of the order Bunyavirales: Update, vol.164, pp.1949-1965, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02611243

S. Chandy, S. Abraham, G. Sridharan, P. Abraham, and G. Sridharan, Hantaviruses: An emerging public health threat in India? A review. (Special issue. Emerging and re-emerging infections in India), J. Biosci, vol.33, pp.495-504, 2008.

B. Knust and P. E. Rollin, Twenty-year summary of surveillance for human hantavirus infections, United States, Emerg. Infect. Dis, vol.19, 1934.

Z. Bi, P. B. Formenty, and C. E. Roth, Hantavirus infection: A review and global update, J. Infect. Dev. Ctries, vol.2, pp.3-23, 2008.

M. T. Milholland, I. Castro-arellano, G. Suzán, G. E. Garcia-peña, T. E. Lee et al., Global diversity and distribution of hantaviruses and their hosts, Ecohealth, vol.15, pp.163-208, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02872333

C. B. Jonsson, L. T. Figueiredo, and O. Vapalahti, A global perspective on hantavirus ecology, epidemiology, and disease, Clin. Microbiol. Rev, vol.23, pp.412-441, 2010.

J. De-araujo, L. M. Thomazelli, D. A. Henriques, D. Lautenschalager, T. Ometto et al., Detection of hantavirus in bats from remaining rain forest in São Paulo, Brazil. BMC Res. Notes, vol.5, 2015.

W. P. Guo, X. D. Lin, W. Wang, J. H. Tian, M. L. Cong et al., Phylogeny and Origins of Hantaviruses Harbored by Bats, Insectivores, and Rodents, PLoS Pathog, vol.9, 2013.

F. Torres-pérez, L. Wilson, S. K. Collinge, H. Harmon, C. Ray et al., Sin nombre virus infection in field workers, Colorado, USA. Emerg. Infect. Dis, vol.16, pp.308-310, 2010.

E. Arellano, I. Castro-arellano, G. Suzán, F. X. González-cózatl, and R. M. Jiménez, Antibody Seroprevalence to Hantaviruses in Rodents from Reserva De La Biosfera Sierra De Huautla, Morelos. West. North Am. Nat, vol.72, pp.105-109, 2012.

J. W. Song, J. K. Hae, K. J. Song, T. T. Truong, S. N. Bennett et al., Newfound hantavirus in Chinese mole shrew, Vietnam. Emerg. Infect. Dis, vol.13, pp.1784-1787, 2007.

S. Arai, S. D. Ohdachi, M. Asakawa, H. J. Kang, G. Mocz et al., Molecular phylogeny of a newfound hantavirus in the Japanese shrew mole (Urotrichus talpoides), Proc. Natl. Acad. Sci, vol.105, pp.16296-16301, 2008.

H. J. Kang, B. Kadjo, S. Dubey, F. Jacquet, and R. Yanagihara, Molecular evolution of Azagny virus, a newfound hantavirus harbored by the West African pygmy shrew (Crocidura obscurior) in Côte d'Ivoire, Virol. J, vol.8, 2011.

H. J. Kang, S. N. Bennett, A. G. Hope, J. A. Cook, and R. Yanagihara, Shared Ancestry between a Newfound Mole-Borne Hantavirus and Hantaviruses Harbored by Cricetid Rodents, J. Virol, vol.85, pp.7496-7503, 2011.

S. Arai, S. T. Nguyen, B. Boldgiv, D. Fukui, K. Araki et al., Novel Bat-borne Hantavirus, Vietnam. Emerg. Infect. Dis, vol.19, pp.1159-1161, 2013.

L. Sumibcay, B. Kadjo, S. H. Gu, H. J. Kang, B. K. Lim et al., Divergent lineage of a novel hantavirus in the banana pipistrelle (Neoromicia nanus) in Côte d'Ivoire, Virol. J, vol.9, 2012.

E. R. Hinson, S. M. Shone, M. C. Zink, G. E. Glass, and S. L. Klien, Wounding: The primary mode of Seoul virus transmission among male Norway rats, Am. J. Trop. Med. Hyg, vol.70, pp.310-317, 2004.

N. E. Mcintyre, Y. K. Chu, R. D. Owen, A. Abuzeineh, N. De-la-sancha et al., A longitudinal study of Bayou virus, hosts, and habitat, Am. J. Trop. Med. Hyg, vol.73, pp.1043-1049, 2005.

H. Kariwa, H. Yoshida, C. Sánchez-hernández, M. De-lourdes-romero-almaraz, J. A. Almazán-catalán et al., Genetic diversity of hantaviruses in Mexico: Identification of three novel hantaviruses from Neotominae rodents, Virus Res, vol.163, pp.486-494, 2012.

M. Schlegel, J. Jacob, D. H. Krüger, A. Rang, and R. G. Ulrich, Hantavirus Emergence in Rodents, Insectivores and Bats: What Comes Next?, 2013.

J. N. Mills, T. G. Ksiazek, B. A. Ellis, P. E. Rollin, S. T. Nichol et al., Patterns of association with host and habitat: Antibody reactive with Sin Nombre virus in small mammals in the major biotic communities of the southwestern United States, Am. J. Trop. Med. Hyg, vol.56, pp.273-284, 1997.

C. Schmaljohn and B. Hjelle, Hantaviruses: A Global Disease Problem, Emerg. Infect. Dis, vol.3, pp.95-104, 1997.

K. L. Hutchinson, P. E. Rollin, W. J. Shieh, S. Zaki, P. W. Greer et al., Transmission of Black Creek Canal virus between cotton rats, J. Med. Virol, vol.60, pp.70-76, 2000.

T. Schountz and J. Prescott, Hantavirus immunology of rodent reservoirs: Current status and future directions, Viruses, vol.6, pp.1317-1335, 2014.

C. C. Chen, K. J. Pei, C. M. Yang, M. D. Kuo, S. T. Wong et al., A possible case of hantavirus infection in a Borneo orangutan and its conservation implication, J. Med. Primatol, vol.40, issue.2-5, 2011.

Å. Lundkvist, J. Verner-carlsson, A. Plyusnina, L. Forslund, R. Feinstein et al., Pet rat harbouring Seoul hantavirus in Sweden, vol.18, 2013.

S. K. Taori, L. J. Jameson, A. Campbell, P. J. Drew, N. D. Mccarthy et al., UK hantavirus, renal failure, and pet rats, Lancet, vol.381, 1070.

J. E. Childs, T. G. Ksiazek, C. F. Spiropoulou, J. W. Krebs, S. Morzunov et al., Serologic and genetic identification of Peromyscus maniculatus as the primary rodent reservoir for a new hantavirus in the southwestern United States, J. Infect. Dis, vol.169, pp.1271-1280, 1994.

J. O. Lloyd-smith, D. George, K. M. Pepkin, V. E. Pitzer, J. R. Pulliam et al., Epidemic dynamics at the human-animal interface, Science, vol.326, pp.1362-1367, 2009.

H. Tian, P. Yu, O. N. Bjørnstad, B. Cazelles, J. Yang et al., Anthropogenically driven environmental changes shift the ecological dynamics of hemorrhagic fever with renal syndrome, PLoS Pathog, vol.13, pp.1-19, 2017.

J. N. Mills, B. R. Amman, and G. E. Glass, Ecology of Hantaviruses and their hosts in North America. Vector-Borne Zoonotic Dis, vol.10, pp.563-574, 2009.

J. Halliday, C. Daborn, H. Auty, Z. Mtema, T. Lembo et al., Bringing together emerging and endemic zoonoses surveillance: Shared challenges and a common solution, Philos. Trans. R. Soc. B Biol. Sci, vol.367, pp.2872-2880, 2012.

F. J. Polop, M. C. Provensal, N. Pini, S. C. Levis, J. W. Priotto et al., Temporal and spatial host abundance and prevalence of Andes hantavirus in Southern Argentina, Ecohealth, vol.7, pp.176-184, 2010.

C. H. Calisher, J. J. Root, J. N. Mills, and B. J. Beaty, Assessment of ecologic and biologic factors leading to hantavirus pulmonary syndrome, Croat. Med. J, vol.43, pp.330-337, 2002.

L. J. Allen, R. K. Mccormack, and C. B. Jonsson, Mathematical models for hantavirus infection in rodents, Bull. Math. Biol, vol.68, pp.511-524, 2006.

P. T. Johnson, D. L. Preston, J. T. Hoverman, and B. E. Lafonte, Host and parasite diversity jointly control disease risk in complex communities, Proc. Natl. Acad. Sci, vol.110, pp.16916-16921, 2013.

R. S. Ostfeld and F. Keesing, Biodiversity and disease risk: The case of Lyme disease, Conserv. Biol, vol.14, pp.722-728, 2000.

C. A. Clay, E. M. Lehmer, S. S. Jeor, and M. D. Dearing, Testing mechanisms of the dilution effect: Deer mice encounter rates, Sin Nombre virus prevalence and species diversity, Ecohealth, vol.6, pp.250-259, 2009.

U. R. Zargar, M. Z. Chishti, F. Ahmad, and M. I. Rather, Does alteration in biodiversity really affect disease outcome?-A debate is brewing, Saudi J. Biol. Sci, vol.22, pp.14-18, 2015.

A. D. Luis, A. J. Kuenzi, and J. N. Mills, Species diversity concurrently dilutes and amplifies transmission in a zoonotic host-pathogen system through competing mechanisms, Proc. Natl. Acad. Sci, vol.115, pp.7979-7984, 2018.

F. Keesing, R. D. Holt, and R. S. Ostfeld, Effects of species diversity on disease risk, Ecol. Lett, vol.9, pp.485-498, 2006.

G. E. Glass, T. L. Yates, J. B. Fine, T. M. Shields, J. B. Kendall et al., Satellite imagery characterizes local animal reservoir populations of Sin Nombre virus in the southwestern United States, Proc. Natl. Acad. Sci, vol.99, pp.16817-16822, 2002.

C. B. Zeimes, G. E. Olsson, C. Ahlm, and S. O. Vanwambeke, Modelling zoonotic diseases in humans: Comparison of methods for hantavirus in Sweden, Int. J. Health Geogr, vol.11, p.39, 2012.

K. A. Murray, N. Preston, T. Allen, C. Zambrana-torrelio, P. R. Hosseini et al., Global biogeography of human infectious diseases, Proc. Natl. Acad. Sci, vol.112, pp.12746-12751, 2015.

F. Bordes, A. Caron, K. Blasdell, M. De-garine-wichatitsky, and S. Morand, Forecasting potential emergence of zoonotic diseases in south-east Asia: Network analysis identifies key rodent hosts, J. Appl. Ecol, vol.54, pp.691-700, 2017.

F. Sauvage, M. Langlais, N. G. Yoccoz, D. Pontier, and N. G. Yoccozt, Modeling hantavirus in fluctuating populations of bank voles: The role of indirect transmission on virus persistence, J. Animal Ecol, vol.72, pp.1-13, 2003.

F. R. Adler, J. M. Pearce-duvet, and M. D. Dearing, How host population dynamics translate into time-lagged prevalence: An Investigation of Sin Nombre virus in deer mice, Bull. Math. Biol, vol.70, pp.236-252, 2008.

M. T. Milholland, I. Castro-arellano, E. Arellano, E. Nava-garcía, G. Rangel-altamirano et al., Species identity supersedes the dilution effect concerning hantavirus prevalence at sites across Texas and México, vol.58, pp.401-412, 2017.

J. L. Curtis, M. T. Milholland, T. Schountz, I. Castro-arellano, and I. Mali, Detection of New World hantavirus antibodies in rodents of eastern New Mexico, J. Wildl. Manag, 2019.

A. Chao, Nonparametric Estimation of the Number of Classes in a Population, Scand. J. Stat, vol.11, pp.265-270, 1984.

R. K. Colwell and J. E. Elsensohn, EstimateS turns 20: Statistical estimation of species richness and shared species from samples, with non-parametric extrapolation, Ecography, vol.37, pp.609-613, 2014.

, EcoSim: Null models software for ecology, p.15, 2013.

A. E. Magurran, Measuring Biological Diversity, pp.19-215, 2004.

S. H. Hurlbert, The nonconcept of species diversity: A critique and alternative parameters, Ecology, vol.52, pp.577-586, 1971.

F. R. Adler, C. A. Clay, and E. M. Lehmer, The role of heterogeneity in the persistence and prevalence of Sin Nombre virus in deer mice, Am. Nat, vol.172, pp.855-867, 2008.

J. M. Gómez, J. Bosch, F. Perfectti, J. Fernández, and M. Abdelaziz, Pollinator diversity affects plant reproduction and recruitment: The tradeoffs of generalization, Oecologia, vol.153, pp.597-605, 2007.

C. O. Webb, D. D. Ackerly, M. A. Mcpeek, and M. J. Donoghue, Phylogenies and community ecology, Annu. Rev. Ecol. Syst, vol.33, pp.475-505, 2002.

C. O. Webb, D. D. Ackerly, and S. W. Kembel, Phylocom: Software for the analysis of phylogenetic community structure and trait evolution, Bioinformatics, vol.24, pp.2098-2100, 2008.

A. R. Ives and M. R. Helmus, Phylogenetic Metrics of Community Similarity, Am. Nat, vol.176, pp.128-142, 2010.

K. R. Clarke and R. M. Warwick, A taxonomic distinctness index and its statistical properties, J. Appl. Ecol, vol.35, pp.523-531, 1998.

G. M. Barker, Phylogenetic diversity: A quantitative framework for measurement of priority and achievement in biodiversity conservation, Biol. J. Linn. Soc. Lond, vol.76, pp.165-194, 2002.

M. R. Helmus, T. J. Bland, C. K. Williams, and A. R. Ives, Phylogenetic measure of biodiversity, Am. Nat, vol.169, pp.68-83, 2007.

O. R. Bininda-emonds, M. Cardillo, K. E. Jones, R. D. Macphee, R. M. Beck et al., The delayed rise of present-day mammals, Nature, vol.446, pp.507-512, 2007.

T. Lumley, Package "leaps": Regression Subset Selection, 2017.

F. Husson, J. Josse, S. Le, J. M. Maintainer, and . Package, FactoMineR" Multivariate Exploratory Data Analysis and Data Mining

&. Chapman and . Hall, , 2017.

S. Miller, Species-specific traits versus site-specific properties as factors influencing the abundances of species, 2014.

P. Scaled, A new approach to dimension reduction, p.29, 2014.

H. Akaike, Information theory and an extension of the maximum likelihood principle, International Symposium on Information Theory, vol.69, 1973.

D. J. Civitello, J. Cohen, H. Fatima, N. T. Halstead, J. Liriano et al., Biodiversity inhibits parasites: Broad evidence for the dilution effect, Proc. Natl. Acad. Sci, vol.112, pp.8667-8671, 2015.

D. J. Salkeld, K. A. Padgett, and J. H. Jones, A meta-analysis suggesting that the relationship between biodiversity and risk of zoonotic pathogen transmission is idiosyncratic, Ecol. Lett, vol.16, pp.679-686, 2013.

P. T. Johnson, R. S. Ostfeld, and F. Keesing, Frontiers in research on biodiversity and disease, Ecol. Lett, vol.18, pp.1119-1133, 2015.

Z. Y. Huang, F. Van-langevelde, A. Estrada-peña, G. Suzán, and W. F. De-boer, The diversity-disease relationship: Evidence for and criticisms of the dilution effect, Parasitology, vol.143, pp.1075-1086, 2016.

A. V. Rubio, I. Castro-arellano, J. N. Mills, R. List, R. Ávila-flores et al., Is species richness driving intra-and interspecific interactions and temporal activity overlap of a hantavirus host? An experimental test, PLoS ONE, vol.12, pp.1-19, 2017.

C. L. Wood, A. Mcinturff, H. S. Young, D. Kim, and K. D. Lafferty, Human infectious disease burdens decrease with urbanization but not with biodiversity, Philos. Trans. R. Soc. Lond. B Biol. Sci, vol.372, 2017.

A. M. Kilpatrick, D. J. Salkeld, G. Titcomb, and M. B. Hahn, Conservation of biodiversity as a strategy for improving human health and well-being, Philos. Trans. R. Soc. Lond. B Biol. Sci, vol.372, 2017.

K. Logiudice, R. S. Ostfeld, K. A. Schmidt, and F. Keesing, The ecology of infectious disease: Effects of host diversity and community composition on Lyme disease risk, Proc. Natl. Acad. Sci, vol.100, pp.567-571, 2003.

L. J. Dizney and L. Ruedas, Increased host species diversity and decreased prevalence of Sin Nombre virus, Emerg. Infect. Dis, vol.15, p.1012, 2009.

G. Suzán, E. Marcé, J. T. Giermakowski, J. N. Mills, G. Ceballos et al., Experimental evidence for reduced rodent diversity causing increased hantavirus prevalence, PLoS ONE, vol.4, p.5461, 2009.

G. Suzán, G. E. García-peña, I. Castro-arellano, O. Rico, A. V. Rubio et al., Metacommunity and phylogenetic structure determine wildlife and zoonotic infectious disease patterns in time and space, Ecol. Evol, vol.5, pp.865-873, 2015.

B. J. Mcgill, B. J. Enquist, E. Weiher, and M. Westoby, Rebuilding community ecology from functional traits, Trends Ecol. Evol, vol.21, pp.178-185, 2006.

F. Keesing, L. K. Belden, P. Daszak, A. Dobson, C. D. Harvell et al., Impacts of biodiversity on the emergence and transmission of infectious diseases, Nature, vol.468, pp.647-652, 2010.

V. Herbreteau, J. P. Gonzalez, and J. P. Hugot, Implication of phylogenetic systematics of Rodent-Borne hantaviruses allows understanding of their distribution, Ann. N. Y. Acad. Sci, pp.39-56, 1081.
URL : https://hal.archives-ouvertes.fr/ird-00714427

B. A. Han, A. M. Kramer, and J. M. Drake, Global patterns of zoonotic disease in mammals, Trends Parasitol, vol.32, pp.565-577, 2016.

F. Gosselin, Improving approaches to the analysis of functional and taxonomic biotic homogenization: Beyond mean specialization, J. Ecol, vol.100, pp.1289-1295, 2012.
URL : https://hal.archives-ouvertes.fr/hal-02597309

V. D. Luan, K. Yoshimatsu, R. Endo, M. Taruishi, V. T. Huong et al., Studies on hantavirus infection in small mammals captured in southern and central highland area of Vietnam, J. Vet. Med. Sci, vol.74, pp.1155-1162, 2012.

Z. Y. Xu, Y. W. Tang, L. Y. Kan, and T. F. Tsai, Cats-source of protection or infection? A case-control study of hemorrhagic fever with renal syndrome, Am. J. Epidemiol, vol.126, pp.942-948, 1987.

C. Chin, T. S. Chiueh, W. C. Yang, T. H. Yang, C. M. Shih et al., Hantavirus infection in Taiwan: The experience of a geographically unique area, J. Med. Virol, vol.60, pp.237-247, 2000.

V. C. Colombo, J. Brignone, C. Sen, M. A. Previtali, M. L. Martin et al., Orthohantavirus genotype Lechiguanas in Oligoryzomys nigripes (Rodentia: Cricetidae): New evidence of host-switching, Acta Trop, vol.191, pp.133-138, 2019.

J. P. Langlois, L. Fahrig, G. Merriam, and H. Artsob, Landscape structure influences continental distribution of hantavirus in deer mice, Landsc. Ecol, vol.16, pp.255-266, 2001.

R. Mackelprang, M. D. Dearing, and S. St-jeor, High prevalence of Sin Nombre virus in rodent populations, central Utah: A consequence of human disturbance? Emerg, Infect. Dis, vol.7, pp.480-482, 2001.

A. J. Kuenzi, R. J. Douglass, D. J. White, C. W. Bond, and J. N. Mills, Antibody to Sin Nombre virus in rodents associated with peridomestic habitats in west central Montana, Am. J. Trop. Med. Hyg, vol.64, pp.137-146, 2001.

B. N. Lonner, R. J. Douglass, A. J. Kuenzi, and K. Hughes, Seroprevalence against Sin Nombre virus in resident and dispersing deer mice. Vector-Borne Zoonotic Dis, vol.8, pp.433-442, 2008.

C. H. Calisher, J. N. Mills, J. J. Root, J. B. Doty, and B. J. Beaty, The relative abundance of deer mice with antibody to Sin Nombre virus corresponds to the occurrence of Hantavirus Pulmonary Syndrome in nearby humans. Vector-Borne Zoonotic Dis, vol.11, pp.577-582, 2010.

M. L. Mckinney, Urbanization as a major cause of biotic homogenization, Biol. Conserv, vol.127, pp.247-260, 2006.

J. D. Olden, Biotic homogenization: A new research agenda for conservation biogeography, J. Biogeogr, vol.33, pp.2027-2039, 2006.

M. A. Linske, S. C. Williams, K. C. Stafford, and I. M. Ortega, Ixodes scapularis (Acari: Ixodidae) reservoir host diversity and abundance impacts on dilution of Borrelia burgdorferi (Spirochaetales: Spirochaetaceae) in residential and woodland habitats in Connecticut, United States, J. Med. Entomol, vol.55, pp.681-690, 2018.

T. L. Yates, J. N. Mills, C. A. Parmenter, T. G. Ksiazek, R. R. Parmenter et al., The ecology and evolutionary history of an emergent disease: Hantavirus Pulmonary Syndrome, Bioscience, vol.52, pp.989-998, 2006.