Y. S. Vassetzky, A. Hair, and S. V. Razin, Rearrangement of chromatin domains in cancer and development, J Cell Biochem, vol.35, pp.54-60, 2000.

S. V. Razin, O. V. Iarovaia, and N. Sjakste, Chromatin domains and regulation of transcription, J Mol Biol, vol.369, pp.597-607, 2007.

C. Brun, Q. Dang, and R. Miassod, Studies of an 800-kilobase DNA stretch of the Drosophila X chromosome: comapping of a subclass of scaffold-attached regions with sequences able to replicate autonomously in Saccharomyces cerevisiae, Mol Cell Biol, vol.10, pp.5455-5463, 1990.
URL : https://hal.archives-ouvertes.fr/hal-01596337

O. Iarovaia, R. Hancock, M. Lagarkova, R. Miassod, and S. V. Razin, Mapping of genomic DNA loop organization in a 500-kilobase region of the Drosophila X chromosome by the topoisomerase II-mediated DNA loop excision protocol, Mol Cell Biol, vol.16, pp.302-308, 1996.

E. Ioudinkova, A. Petrov, S. V. Razin, and Y. S. Vassetzky, Mapping long-range chromatin organization within the chicken alpha-globin gene domain using oligonucleotide DNA arrays, Genomics, vol.85, pp.143-151, 2005.

A. K. Linnemann, A. E. Platts, and S. A. Krawetz, Differential nuclear scaffold/matrix attachment marks expressed genes, Hum Mol Genet, vol.18, pp.645-654, 2009.

K. J. Drennan, A. K. Linnemann, A. E. Platts, H. H. Heng, D. R. Armant et al., Nuclear matrix association: switching to the invasive cytotrophoblast, Placenta, vol.31, pp.365-372, 2010.

A. E. Platts, A. K. Quayle, and S. A. Krawetz, In silico prediction and observations of nuclear matrix attachment, Cell Mol Biol Lett, vol.11, pp.191-213, 2006.

J. Mirkovitch, M. E. Mirault, and U. K. Laemmli, Organization of the higher-order chromatin loop: specific DNA attachment sites on nuclear scaffold, Cell, vol.39, pp.223-232, 1984.

Y. S. Vassetzky, A. N. Bogdanova, and S. V. Razin, Analysis of the chicken DNA fragments that contain structural sites of attachment to the nuclear matrix: DNA-matrix interactions and replication, J Cell Biochem, vol.79, pp.1-14, 2000.

Y. Vassetzky, A. Hair, and M. Mechali, Rearrangement of chromatin domains during development in Xenopus, Genes Dev, vol.14, pp.1541-1552, 2000.

F. Oberhammer, J. W. Wilson, and C. Dive, Apoptotic death in epithelial cells: cleavage of DNA to 300 and/or 50 kb fragments prior to or in the absence of internucleosomal fragmentation, EMBO J, vol.12, pp.3679-3684, 1993.

A. Petrov, I. Pirozhkova, D. Laoudj, G. Carnac, M. Lipinski et al., Chromatin loop domain organization within the 4q35 locus in facioscapulohumeral dystrophy patients versus normal human myoblasts, Proc Natl Acad Sci, vol.103, pp.6982-6987, 2006.

A. V. Petrov, J. Allinne, I. V. Pirozhkova, D. Laoudj, M. Lipinski et al., A nuclear matrix attachment site in the 4q35 locus has an enhancer-blocking activity in vivo: implications for the facio-scapulo-humeral dystrophy, Genome Res, vol.18, pp.39-45, 2008.

J. Bode and K. Maass, Chromatin domain surrounding the human interferon-beta gene as defined by scaffold-attached regions, Biochemistry, vol.27, pp.4706-4711, 1988.

W. C. Forrester, L. A. Fernandez, and R. Grosschedl, Nuclear matrix attachment regions antagonize methylation-dependent repression of long-range enhancer-promoter interactions, Genes Dev, vol.13, pp.3003-3014, 1999.

L. A. Fernandez, M. Winkler, and R. Grosschedl, Matrix attachment region-dependent function of the immunoglobulin mu enhancer involves histone acetylation at a distance without changes in enhancer occupancy, Mol Cell Biol, vol.21, pp.196-208, 2001.

J. H. Martens, M. Verlaan, E. Kalkhoven, J. C. Dorsman, and A. Zantema, Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes, Mol Cell Biol, vol.22, pp.2598-2606, 2002.

J. C. Degreef, R. R. Frants, and S. M. Van-der-maarel, Epigenetic mechanisms of facioscapulohumeral muscular dystrophy, Mutat Res, vol.647, pp.94-102, 2008.

P. Dmitriev, M. Lipinski, and Y. S. Vassetzky, Pearls in the junk: dissecting the molecular pathogenesis of facioscapulohumeral muscular dystrophy, Neuromusc Disord, vol.19, pp.17-20, 2009.

P. Dmitriev, A. Barat, and E. Cochet, FSHD myoblasts fail to downregulate intermediate filament protein vimentin during myogenic differentiation, Biopolym Cell, vol.27, pp.359-363, 2011.

R. J. Lemmers, P. J. Van-der-vliet, and R. Klooster, A unifying genetic model for facioscapulohumeral muscular dystrophy, Science, vol.329, pp.1650-1653, 2010.

R. J. Lemmers, M. Wohlgemuth, and K. J. Van-der-gaag, Specific sequence variations within the 4q35 region are associated with facioscapulohumeral muscular dystrophy, Am J Hum Genet, vol.81, pp.884-894, 2007.

R. J. Lemmers, P. J. Van-der-vliet, and K. J. Van-der-gaag, Worldwide population analysis of the 4q and 10q subtelomeres identifies only four discrete interchromosomal sequence transfers in human evolution, Am J Hum Genet, vol.86, pp.364-377, 2010.

G. Forlani, E. Giarda, and U. Ala, The MeCP2/YY1 interaction regulates ANT1 expression at 4q35: novel hints for Rett syndrome pathogenesis, Hum Mol Genet, vol.19, pp.3114-3123, 2010.

T. Kondo, M. P. Bobek, and R. Kuick, Whole-genome methylation scan in ICF syndrome: hypomethylation of non-satellite DNA repeats D4Z4 and NBL2, Hum Mol Genet, vol.9, pp.597-604, 2000.

J. C. De-greef, R. J. Lemmers, and B. G. Van-engelen, Common epigenetic changes of D4Z4 in contraction-dependent and contraction-independent FSHD, Hum Mutat, vol.30, pp.1449-1459, 2009.

B. Cadieux, T. T. Ching, S. R. Vandenberg, and J. F. Costello, Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation, Cancer Res, vol.66, pp.8469-8476, 2006.

K. Tsumagari, L. Qi, and K. Jackson, Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers, Nucleic Acids Res, vol.36, pp.2196-2207, 2008.

A. N. Katargin, L. S. Pavlova, F. L. Kisseljov, and N. P. Kisseljova, Hypermethylation of genomic 3.3-kb repeats is frequent event in HPV-positive cervical cancer, BMC Med Genom, vol.2, p.30, 2009.

S. H. Choi, S. Worswick, and H. M. Byun, Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer, Int J Cancer, vol.125, pp.723-729, 2009.

G. Tilman, A. Loriot, and A. Van-beneden, Subtelomeric DNA hypomethylation is not required for telomeric sister chromatid exchanges in ALT cells, Oncogene, vol.28, pp.1682-1693, 2009.

M. Barro, G. Carnac, S. Flavier, J. Mercier, and Y. S. Vassetzky, Laoudj-Chenivesse D: Primary myoblasts derived from the facioscapulohumeral dystrophy patients are hypersensitive to oxidative stress and show defects upon terminal differentiation, J Cell Mol Med, vol.14, pp.275-289, 2010.

S. M. Gasser and Y. S. Vassetzky, Analysis of nuclear scaffold attachment regions, Chromatin: A Pratical Approach, pp.111-124, 1998.

W. H. Stratling and F. Yu, Origin and roles of nuclear matrix proteins. Specific functions of the MAR-binding protein MeCP2/ARBP, Crit Rev Eukaryot Gene Expr, vol.9, pp.311-318, 1999.

S. Horike, S. Cai, M. Miyano, J. F. Cheng, and T. Kohwi-shigematsu, Loss of silentchromatin looping and impaired imprinting of DLX5 in Rett syndrome, Nat Genet, vol.37, pp.31-40, 2005.

E. R. Eivazova, A. Gavrilov, and I. Pirozhkova, Interaction in vivo between the two matrix attachment regions flanking a single chromatin loop, J Mol Biol, vol.386, pp.929-937, 2009.

R. J. Klose, S. A. Sarraf, L. Schmiedeberg, S. M. Mcdermott, I. Stancheva et al., DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG, Mol Cell, vol.19, pp.667-678, 2005.

W. Zeng, J. C. De-greef, and Y. Y. Chen, Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD), PLoS Genet, vol.5, p.1000559, 2009.

P. G. Van-overveld, R. J. Lemmers, and L. A. Sandkuijl, Hypomethylation of D4Z4 in 4q-linked and non-4q-linked facioscapulohumeral muscular dystrophy, Nat Genet, vol.35, pp.315-317, 2003.

J. M. Weitzel, H. Buhrmester, and W. H. Stratling, Chicken MAR-binding protein ARBP is homologous to rat methyl-CpG-binding protein MeCP2, Mol Cell Biol, vol.17, pp.5656-5666, 1997.