Nuttalliella namaqua: A Living Fossil and Closest Relative to the Ancestral Tick Lineage: Implications for the Evolution of Blood-Feeding in Ticks, PLOS ONE, vol.6, p.23675, 2011. ,
The Mitochondrial Genomes of Nuttalliella namaqua (Ixodoidea: Nuttalliellidae) and Argas africolumbae (Ixodoidae: Argasidae): Estimation of Divergence Dates for the Major Tick Lineages and Reconstruction of Ancestral Blood-Feeding Characters, PLoS ONE, vol.7, 2012. ,
, The Hard Ticks of the World, 2014.
Phylogeny, evolution and historical zoogeography of ticks: a review of recent progress, Exp. Appl. Acarol, vol.28, pp.55-68, 2002. ,
Phylogeny of hard-and soft-tick taxa (Acari: Ixodida) based on mitochondrial 16S rDNA sequences, Proc. Natl. Acad. Sci, vol.91, pp.10034-10038, 1994. ,
Phylogenetic analysis of ticks (Acari: Ixodida) using mitochondrial genomes and nuclear rRNA genes indicates that the genus Amblyomma is polyphyletic, Mol. Phylogenet. Evol, vol.64, pp.45-55, 2012. ,
Phylogenetic analysis of the mitochondrial genomes and nuclear rRNA genes of ticks reveals a deep phylogenetic structure within the genus Haemaphysalis and further elucidates the polyphyly of the genus Amblyomma with respect to Amblyomma sphenodonti and Amblyomma elaphense, Ticks Tick-Borne Dis, vol.4, pp.265-274, 2013. ,
Molecular phylogeny of soft ticks (Ixodida: Argasidae) inferred from mitochondrial genome and nuclear rRNA sequences, Ticks Tick-Borne Dis, vol.5, pp.195-207, 2014. ,
Argasid and ixodid systematics: Implications for soft tick evolution and systematics, with a new argasid species list, Ticks Tick-Borne Dis, vol.10, pp.219-240, 2019. ,
URL : https://hal.archives-ouvertes.fr/pasteur-02001658
Systematics of the Subfamily Ixodinae (Acarina: Ixodidae). 1. the Subgenera of Ixodes, Ann. Entomol. Soc. Am, vol.66, pp.489-500, 1973. ,
The ticks of the world (Acarida, Ixodida): nomenclature, described stages, hosts, distribution, 1998. ,
Ticks of Europe and North Africa: A Guide to Species Identification, 2018. ,
Contributions to the phylogeny of Ixodes (Pholeoixodes) canisuga, I. (Ph.) kaiseri, I. (Ph.) hexagonus and a simple pictorial key for the identification of their females, Parasit. Vectors, vol.10, 2017. ,
Systematics and evolution of ticks with a list of valid genus and species names, Parasitology, vol.129, pp.15-36, 2004. ,
Phylogenetic relationships in the family Ixodidae with emphasis on the genus Ixodes (Parasitiformes: Ixodidae), pp.349-354, 1999. ,
Systematics and Biogeography of Hard Ticks, a Total Evidence Approach, Cladistics, vol.16, pp.79-102, 2000. ,
Phylogenomics and the reconstruction of the tree of life, Nat. Rev. Genet, vol.6, p.361, 2005. ,
URL : https://hal.archives-ouvertes.fr/halsde-00193293
Phylogenomics: the beginning of incongruence?, Trends Genet, vol.22, pp.225-231, 2006. ,
URL : https://hal.archives-ouvertes.fr/halsde-00315496
A phylogenetic backbone for Bivalvia: an RNA-seq approach, Proc. R. Soc. B Biol. Sci, vol.282, p.20142332, 2015. ,
Phylogenomic Interrogation of Arachnida Reveals Systemic Conflicts in Phylogenetic Signal, Mol. Biol. Evol, vol.31, pp.2963-2984, 2014. ,
Unnoticed in the tropics: phylogenomic resolution of the poorly known arachnid order Ricinulei (Arachnida), R. Soc. Open Sci, vol.2, p.150065, 2015. ,
Phylogenomics illuminates the backbone of the Myriapoda Tree of Life and reconciles morphological and molecular phylogenies, Sci. Rep, vol.8, p.83, 2018. ,
Evolutionary History of the Hymenoptera, Curr. Biol, vol.27, pp.1013-1018, 2017. ,
Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia), BMC Genomics, vol.15, p.32, 2014. ,
Sialomes and Mialomes: A Systems-Biology View of Tick Tissues and Tick-Host Interactions, Trends Parasitol, vol.32, pp.242-254, 2016. ,
Gut transcriptome analysis on females of Ornithodoros mimon (Acari: Argasidae) and phylogenetic inference of ticks, Rev. Bras. Parasitol. Veterinária, vol.26, pp.185-204, 2017. ,
Transcriptome and toxin family analysis of the paralysis tick, Ixodes holocyclus, Int. J. Parasitol, vol.48, pp.71-82, 2018. ,
Bird ticks in Hungary reflect western, southern, eastern flyway connections and two genetic lineages of Ixodes frontalis and Haemaphysalis concinna, Parasit. Vectors, vol.9, p.1365, 2016. ,
CAP3: A DNA Sequence Assembly Program, Genome Res, vol.9, pp.868-877, 1999. ,
Mitogenomes reveal diversity of the European Lyme borreliosis vector Ixodes ricinus in Italy, Mol. Phylogenet. Evol, vol.101, pp.194-202, 2016. ,
Tick-Box for 3?-End Formation of Mitochondrial Transcripts in Ixodida, Basal Chelicerates and Drosophila, PLOS ONE, vol.7, p.47538, 2012. ,
Ancestral reconstruction of tick lineages, Ticks Tick-Borne Dis, vol.7, pp.509-535, 2016. ,
Evolution of Duplicate Control Regions in the Mitochondrial Genomes of Metazoa: A Case Study with Australasian Ixodes Ticks, Mol. Biol. Evol, vol.22, pp.620-629, 2005. ,
Mitochondrial genomes of parasitic arthropods: implications for studies of population genetics and evolution, Parasitology, vol.134, pp.153-167, 2007. ,
A Transcriptomic-Phylogenomic Analysis of the Evolutionary Relationships of Flatworms, Curr. Biol, vol.25, pp.1347-1353, 2015. ,
Next-generation sequencing as means to retrieve tick systematic markers, with the focus on Nuttalliella namaqua (Ixodoidea: Nuttalliellidae), Ticks Tick-Borne Dis, vol.6, pp.450-462, 2015. ,
Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data, Syst. Biol, vol.60, pp.719-731, 2011. ,
The Ixodes ricinus complex worldwide: diagnosis of the species in the complex, hosts and distribution, Acarology IX: Symposia, pp.341-347, 1999. ,
Ixodid Ticks (Acari, Ixodidae) in Urban Landscapes. A review, Vestn. Zool, vol.50, pp.155-162, 2016. ,
Redescription, molecular features, and neotype deposition of Rhipicephalus pusillus Gil Collado and Ixodes ventalloi Gil Collado (Acari, Ixodidae), Zootaxa, vol.4442, pp.262-276, 2018. ,
Molecular features of Ixodes kazakstani: first results. Ticks Tick-Borne Dis, vol.9, pp.759-761, 2018. ,
Molecular phylogenetic analyses indicate that the Ixodes ricinus complex is a paraphyletic group, J. Parasitol, vol.89, pp.452-457, 2003. ,
Data-driven predictions and novel hypotheses about zoonotic tick vectors from the genus Ixodes, BMC Ecol, vol.18, p.7, 2018. ,
An insight into the sialome of Hyalomma excavatum, Ticks Tick-Borne Dis, vol.8, pp.201-207, 2017. ,
Impact of Missing Data on Phylogenies Inferred from Empirical Phylogenomic Data Sets, Mol. Biol. Evol, vol.30, pp.197-214, 2013. ,
Mitochondrial gene order is not conserved in arthropods: prostriate and metastriate tick mitochondrial genomes, Mol. Biol. Evol, vol.15, pp.1772-1785, 1998. ,
Accumulation of acaricide resistance mechanisms in Rhipicephalus (Boophilus) microplus (Acari: Ixodidae) populations from New Caledonia Island, Vet. Parasitol, vol.147, pp.276-288, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-02152318
Swift sympatric adaptation of a species of cattle tick to a new deer host in New Caledonia, Infect. Genet. Evol, vol.10, pp.976-983, 2010. ,
Ixodes ticks belonging to the Ixodes ricinus complex encode a family of anticomplement proteins, Insect Mol. Biol, vol.16, pp.155-166, 2007. ,
Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate-Invertebrate Gap, PLoS Genet, vol.9, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00866204
Comparative population genomics in animals uncovers the determinants of genetic diversity, Nature, vol.515, pp.261-263, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01313724
Understanding the evolutionary structural variability and target specificity of tick salivary Kunitz peptides using next generation transcriptome data, BMC Evol. Biol, vol.14, p.4, 2014. ,
, , 1996.
Les tiques: identification, biologie, importance médicale et vétérinaire, 2007. ,
Ticks of Australia. The species that infest domestic animals and humans, Zootaxa, vol.3816, pp.1-144, 2014. ,
Differential diagnosis of three common Ixodes spp. ticks infesting songbirds of Western Europe: Ixodes arboricola, I. frontalis and I. ricinus, Ticks Tick-Borne Dis, vol.5, pp.693-700, 2014. ,
Contrasting detachment strategies in two congeneric ticks (Ixodidae) parasitizing the same songbird, Parasitology, vol.137, pp.661-667, 2010. ,
Whole body transcriptomes and new insights into the biology of the tick Ixodes ricinus, Parasit. Vectors, vol.11, p.364, 2018. ,
Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, pp.2114-2120, 2014. ,
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis, Nat. Protoc, vol.8, pp.1494-1512, 2013. ,
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences, Bioinformatics, vol.22, pp.1658-1659, 2006. ,
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs, Bioinformatics, vol.31, pp.3210-3212, 2015. ,
Ultra-fast sequence clustering from similarity networks with SiLiX, BMC Bioinformatics, vol.12, p.116, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00698365
BLAST+: architecture and applications, BMC Bioinformatics, vol.10, p.421, 2009. ,
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res, vol.22, pp.4673-4680, 1994. ,
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis, Mol. Biol. Evol, vol.17, pp.540-552, 2000. ,
Basal Divergences in Birds and the Phylogenetic Utility of the Nuclear RAG-1 Gene, Mol. Phylogenet. Evol, vol.12, pp.115-123, 1999. ,
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies, Mol. Biol. Evol, vol.32, pp.268-274, 2015. ,
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices, Syst. Biol, vol.65, pp.997-1008, 2016. ,
ModelFinder: fast model selection for accurate phylogenetic estimates, Nat. Methods, vol.14, pp.587-589, 2017. ,
Improving the Ultrafast Bootstrap Approximation, Mol. Biol. Evol, vol.35, pp.518-522, 2018. ,
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process, Mol. Biol. Evol, vol.21, pp.1095-1109, 2004. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00108585
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating, Bioinformatics, vol.25, pp.2286-2288, 2009. ,
Computing Supernetworks from Quartets, IEEE/ACM Trans. Comput. Biol. Bioinform, vol.10, pp.151-160, 2013. ,
Simple Methods for Testing the Molecular Evolutionary Clock Hypothesis, 1993. ,