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BioTIME: A database of biodiversity time series for the Anthropocene

Maria Dornelas Andrew Antão Andrew Moyes John Bates Anne Magurran Dušan Adam Asem Akhmetzhanova Ward Appeltans 1 José Arcos Andrew Hale 2 Narayanan Ayyappan 3 Andrew Badihi Andrew Baird Andrew Barbosa Tiago Egydio Barreto Claus Bässler Victor Bellgrove Jon Belmaker Lisandro Benedetti-Cecchi 4 Brian Bett Anne Bjorkman Magdalena Błażewicz S. Blowes Christopher Bloch Timothy Bonebrake Andrew Boyd Matt Bradford 5 Andrew Brooks James Brown Helge Bruelheide 6 Phaedra Budy Fernando Carvalho Mia Castañeda-Moya Allen Chen John Chamblee James Chase John Siegwart Collier Sharon Collinge Richard Condit Elisabeth Cooper Hans Cornelissen Unai Cotano Kyle Kyle Crow Gabriel Damasceno Claire Davies Robert Davis Frank Frank Steven Degraer 7 Victor Doherty Con Dunn Giselda Durigan 8 J. Emmett Duffy Dor Edelist Graham Edgar Robin Elahi Sara Elmendorf Anders Enemar Con Ernest Con Escribano Marc Estiarte 9 Con Evans Tung-Yung Fan 10 Luiz Turini Farah Luiz Loureiro Fernandes Jan Farneda Alessandra Fidelis 11 Robert Fitt Maria Fosaa Geraldo Antonio Daher Correa Franco James Frank William Fraser 12 Hernando García Robert Cazzolla Gatti Or Givan 13 Elizabeth Gorgone-Barbosa William Gould Corinna Gries Gary Grossman Julio Gutierréz Stephen Hale Mark Harmon John Harte Gary Haskins Donald Henshaw John Hermanutz Con Hidalgo Pedro Higuchi Andrew Hoey Gert van Hoey Annika Hofgaard 14 Kristen Holeck Robert Hollister Richard Holmes James Hoogenboom Chih-Hao Hsieh Stephen Hubbell Falk Huettmann 15 Christine Huffard Carolina Hurlbert Natália Macedo Ivanauskas Jan Janík Jan Jandt Anna Jażdżewska 16 Tore Johannessen John Johnstone Jon Jones Andrew Jones Andrew Kang Con Kartawijaya Erin Keeley Con Kelt Andrew Kinnear Kari Klanderud Halvor Knutsen Christopher Koenig Andrew Kortz Kamil Král Linda Kuhnz James Kuo David Kushner Claire Laguionie-Marchais Lesley Lancaster 17 Cheol Min Lee Jon Lefcheck Esther Lévesque 18 David Lightfoot Francis Lloret John Lloyd 19 Adrià López-Baucells Maite Louzao 20 Joshua Madin Borgþór Magnússon Shahar Malamud Andrew Matthews Kent Mcfarland Brian Mcgill Diane Mcknight Con Mclarney Con Meador Peter Meserve Daniel Metcalfe Christoph Sal Anders Michelsen 21 Nataliya Milchakova Tom Moens Even Moland 22 Andrew Moore 23 Con Mathias Moreira Jörg Müller 24 Grace Murphy Isla Myers-Smith Randall Myster Andrew Naumov Francis Neat Nelson Nelson Michael Paul Nelson Stephen Newton Natalia Norden 25 Jeffrey Oliver Esben Olsen Vladimir Onipchenko Krzysztof Pabis Robert Pabst Alain Paquette 26 Con Pardede Andrew Paterson 27 Raphaël Pelissier 28 Josep Peñuelas 9 Con Pérez-Matus Oscar Pizarro 29 Francesco Pomati Eric Post 30 Herbert Prins John Priscu Pieter Provoost Kathleen Prudic Erkki Pulliainen B. Ramesh Olivia Mendivil Ramos Andrew Rassweiler 31 Jose Eduardo Rebelo Daniel Reed Peter Reich 32 Suzanne Remillard Richard Richardson Itai van Rijn Ricardo Rocha Victor Rivera-Monroy Christian Rixen 33 Kevin Robinson Ricardo Ribeiro Rodrigues José de Cerqueira Rossa-Feres Lars Rudstam Henry Ruhl Con Ruz Eric Sampaio Nancy Rybicki Andrew Rypel Sofia Sal Beatriz Salgado Flávio Santos 34 Ana Paula Savassi-Coutinho Sara Scanga Jochen Schmidt Robert Schooley Con Setiawan Kwang-Tsao Shao 35 Gaius Woods Sally Sherman Thomas Sherry Jacek Siciński 16 Caya Sievers Ana Carolina da Silva Carl Rodrigues da Silva Fabio Silveira Con Slingsby Tracey Smart Sara Snell Con Soudzilovskaia Jan Souza Flaviana Maluf Souza Vinícius Castro Souza Christopher Stallings Rowan Stanforth Emily Stanley José Mauro Sterza Maarten Stevens Rick Stuart-Smith Yzel Rondon Suarez Sara Supp Jorge Yoshio Tamashiro Con Tarigan Gary Thiede Simon Thorn Anne Tolvanen Maria Teresa Zugliani Toniato Robert Twilley Gediminas Vaitkus Nelson Valdivia 36 Martha Isabel Vallejo Thomas Valone Carl van Colen Jan Vanaverbeke 37 Fabio Venturoli Hans Verheye Marcelo Vianna Rui Vieira Tomáš Vrška Con Quang Vu Lien van Vu Robert Waide Conor Waldock Dave Watts Sara Webb Tomasz Wesołowski 38 Ethan White Claire Widdicombe 39 Dustin Wilgers Richard Williams Stefan Williams Mark Williamson Michael Willig Trevor Willis Sonja Wipf Kerry Woods Eric Woehler 40 Kyle Zawada Michael Zettler
1 International Oceanographic Data and Information Exchange (IODE) of the Intergovernmental Oceanographic Commission of UNESCO, Oostende
2 Safety science group
3 IFP - Institut Français de Pondichéry
4 Department of Biology [Pisa]
5 CSIRO Land and Water
6 Institute of Biology/Geobotany and Botanical Garden
7 Management Unit of the Mathematical Model of the North Sea
8 Floresta Estadual Assis
9 Global Ecology Unit CREAF-CEAB-CSIC
10 National Museum of Marine Biology and Aquarium
11 USP - Universidade de São Paulo
12 Polar Oceans Research Group [USA]
13 Department of Zoology
14 NINA - Norwegian Institute for Nature Research
15 EWHALE Laboratory of Biology and Wildlife Department
16 Laboratory of Polar Biology and Oceanobiology
17 EEB-UCSC - Dept Ecol Evol Biol, Univ California SC
18 Département de chimie-biologie & Centre d’études nordiques [CANADA]
19 UBC - Human Communication Technologies Research Laboratory
20 Instituto Espanol de Oceanografia
21 Department of Biology [Copenhagen]
22 Institute of Marine Research
23 Computer Laboratory [Cambridge]
24 Aarhus University [Aarhus]
25 EDB - Evolution et Diversité Biologique
26 Centre for Forest Research (CFR)
27 The Centre for Applied Genomics, Toronto
28 UMR AMAP - Botanique et Modélisation de l'Architecture des Plantes et des Végétations
29 COPAS - Centro de Investigación Oceanográfica en el Pacífico Sur Oriental
30 Department of Biology
31 Department of Biological Science [Tallahassee]
32 Department of Forest Resources
33 WSL Institute for Snow and Avalanche Research SLF
34 Communication Systems Group [Zurich]
35 Academia Sinica
36 Facultad Ciencias del Mar
37 Marine Biology Section
38 Department of Avian Ecology
39 PML - Plymouth Marine Laboratory
40 IMAS - Institute for Marine and Antarctic Studies [Horbat]
Abstract : Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene. Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record. Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2). Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year. Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.
Keywords : Biodiversity Global Spatial Species richness Turnover
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Maria Dornelas, Andrew Antão, Andrew Moyes, John Bates, Anne Magurran, et al.. BioTIME: A database of biodiversity time series for the Anthropocene. Global Ecology and Biogeography, Wiley, 2018, 27 (7), pp.760 - 786. ⟨10.1111/geb.12729⟩. ⟨hal-01883395⟩

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